I really like the "search filter" to suppress unwanted script entries. And it's a very good thing to have the links right available to add filter terms. Unfortunately, this makes the result pages twice as long - so may I suggest a small style enhancement:

td.script-meat div { display:none !important; }
td.script-meat:hover div { display:block !important; }

This hides the fancy links until the mouse hovers over the corresponding table cell. You could of course add one more toggle, so users are able to easily switch this behavior on/off according to their gusto.

Besides: The list of toggle switches in the users menu got quite large. If one has some more scripts with items here running, it soon gets a bit messy. How about using something like GM_config or GM_config extender to collect most of the items, by default leaving only the call to the config there? As the author of the latter mentioned script, I can of course provide some help

I included that styling in my UserScripts.Org Compact style, if anyone is interested in that. Thanx for uncluttering the menu, by the way!