// Copyright (C) 2007 Noel O'Boyle
//
// Released under the GPL license
// http://www.gnu.org/copyleft/gpl.html
// --------------------------------------------------------------------
//
// ==UserScript==
// @name Add to Connotea from Journal pages
// @namespace http://www.blueobelisk.org
// @description Adds articles to Connotea from journal pages
// @include http://pubs*.acs.org/*
// @include http://www.rsc.org/*
// @include http://www*.interscience.wiley.com/*
// @include http://www.nature.com/*
// @include http://www.malariajournal.com/*
// @include http://*.oxfordjournals.org/*
// @include http://*.plosjournals.org/*
// @include http://www.pnas.org/*
// ==/UserScript==
//
// 12-Sep-07: Fixed bug that prevented re-use of tags
// 28-Aug-07: Removed all references to overlib
GM_registerMenuCommand("Change your Connotea username", enterusername);
// GM_registerMenuCommand("Change your Connotea username", function(e) {alert("hey");});
queue = [];
queue_index = 0;
oldqueue = [];
main();
function enterusername(ev) {
GM_log("starting enterusername");
var d=document,b=d.body,e=d.getElementById('stackitusername');if(e)e.parentNode.removeChild(e);e=d.createElement('div');e.id='stackitusername';var st={color:'white',backgroundColor:'green',font:'normal 14px Sans-Serif',padding:'2px',margin:'0',position:window.attachEvent?'absolute':'fixed',top:'4px',right:'4px',zindex:'100',textAlign:'left'};for(s in st)e.style[s]=st[s];b.appendChild(e);
var poptext = "<form name='connoteaform'><table><tr><td align='center'><b>Configure 'Add to Connotea'</b></td><td align='right'><input id='stackitusernamecancel' type='button' value='Cancel'/></td></tr>";
poptext += '<tr><td colspan="2"><input id="stackitusernamebox" type="textbox"/>Enter your Connotea username</td></tr>';
poptext += "<td><tr><input id='stackitusernamesubmit' type='button' value='Set username'/></td><td align='right' style='font-size:70%'>Powered by <a href='http://www.connotea.org'>Connotea</a> and <a href='http://www.blueobelisk.org'>blueobelisk.org</a></td></tr></table></form>";
e.innerHTML=poptext;
b.appendChild(e);
var button = document.getElementById("stackitusernamesubmit");
button.addEventListener("click", changeusername, true);
var cancel = document.getElementById("stackitusernamecancel");
cancel.addEventListener("click", cancelusername, true);
}
function submit(ev) {
var doi = ev.target.id;
var d=document,b=d.body,e=d.getElementById('stackitpopup');if(e)e.parentNode.removeChild(e);e=d.createElement('div');e.id='stackitpopup';var st={color:'white',backgroundColor:'green',font:'normal 14px Sans-Serif',padding:'2px',margin:'0',position:window.attachEvent?'absolute':'fixed',top:'4px',right:'4px',zindex:'100',textAlign:'left'};for(s in st)e.style[s]=st[s];b.appendChild(e);
var poptext = "<form name='connoteaform'><table><tr><td align='center'><b>doi://"+doi+"</b></td><td align='right'><input id='stackitcancel' type='button' value='Cancel'/></td></tr>";
var tags = eval('(' + GM_getValue("tags", "[]") + ')');
tags.sort();
var newtags = [];
for (var i=0; i<tags.length; i++) {
if (tags[i]!="stackit")
newtags.push(tags[i]);
}
poptext += "<tr><td style='font-size: 11px' rowspan='" + (newtags.length+3) + "'><b>Tags</b><br/>";
var N = 15;
poptext += "<table>";
for (row=0; row<N; row++) {
poptext+="<tr>";
for (col=0; col<parseInt((newtags.length+N-1) / N); col++) {
index = col*N + row;
if (index < newtags.length)
poptext += "<td><input type='checkbox' id='stackittagbox_" + index + "' name='tagboxes' value='" + newtags[index] + "'>" + newtags[index] + "</input></td>";
}
poptext+="</tr>";
}
poptext+="</table>";
poptext += '<input id="stackitextratags" type="textbox"/><br/>e.g. "animal phylogeny" evolution';
poptext += "</td><td rowspan='8'><textarea rows='4' cols='35' id='stackitdescription'/>Description</textarea><br/><textarea rows='4' cols='35' id='stackitcomment'/>Comment</textarea><br/><input type='checkbox' id='stackitauthor'>I am an author</input><br/><input type='checkbox' id='stackitprivate'>Keep private</input></td></tr>";
poptext += "</table><table>";
poptext += "<td><tr><input id='stackitsubmit' type='button' value='Add to Connotea'/></td><td align='right' style='font-size:70%'>Powered by <a href='http://www.connotea.org'>Connotea</a> and <a href='http://www.blueobelisk.org'>blueobelisk.org</a></td></tr></table></form>";
e.innerHTML=poptext;
b.appendChild(e);
var button = document.getElementById("stackitsubmit");
button.setAttribute("name", doi);
button.addEventListener("click", addnewnote, true);
var cancel = document.getElementById("stackitcancel");
cancel.addEventListener("click", cancelsubmit, true);
}
function insertaddtoconnotea(doi, textarea) {
space = document.createElement("span");
space.innerHTML = " ";
numstacks = document.createElement("span");
numstacks.setAttribute("style", "font-weight:bold; font-size: 14; font-family: Arial;");
// numstacks.setAttribute("href", "http://www.connotea.org/uri/" + doi);
img = document.createElement("img");
img.setAttribute("alt","Connotea");
img.setAttribute("src","http://www.connotea.org/connotea_icon.png");
img.setAttribute("style", "position:relative; bottom: -4px");
img.setAttribute("border","0");
img.setAttribute("id",doi); // This is 'passed' to the submit callback
img.addEventListener("click", submit, true);
//insert the created nodes before the next sibling of the DOI containing node
textarea.parentNode.insertBefore(numstacks, textarea.nextSibling);
textarea.parentNode.insertBefore(img, textarea.nextSibling);
textarea.parentNode.insertBefore(space, textarea.nextSibling);
return numstacks;
}
function message(text) {
var d=document,b=d.body,e=d.getElementById('stackitmessage');if(e)e.parentNode.removeChild(e);e=d.createElement('div');e.id='stackitmessage';var st={color:'white',backgroundColor:'red',font:'normal 14px Sans-Serif',padding:'2px',margin:'0',position:window.attachEvent?'absolute':'fixed',top:'4px',right:'4px',zindex:'100',textAlign:'left'};for(s in st)e.style[s]=st[s];b.appendChild(e);
e.innerHTML = text;
window.setTimeout(deletemessage, 3000);
}
function deletemessage() {
var d=document,b=d.body,e=d.getElementById('stackitmessage');if(e)e.parentNode.removeChild(e);
}
function addnewnote(ev) {
//GM_log("Starting addnewnote");
popup = document.getElementById("stackitpopup");
tags = eval('(' + GM_getValue("tags", "[]") + ')');
chosentags = [];
for (i=0; i<tags.length; i++) {
c = document.getElementById("stackittagbox_" + i);
if (c && c.checked)
chosentags.push('"' + c.value + '"');
}
extratags = document.getElementById("stackitextratags");
if (extratags.value) chosentags.push(extratags.value);
chosentags.push('"stackit"');
description = document.getElementById("stackitdescription").value;
if (description=="Description") description="";
comment = document.getElementById("stackitcomment").value;
author = document.getElementById("stackitauthor").checked;
if (author) author=1;
else author = 0;
keepprivate = document.getElementById("stackitprivate").checked;
if (keepprivate) keepprivate=1;
else keepprivate = 0;
if (comment=="Comment") comment="";
if (popup) popup.parentNode.removeChild(popup);
doi = "http://dx.doi.org/" + ev.target.name;
datastring = encodeURI('uri=' + doi + '&tags=' + chosentags.join(" ") + '&comment=' + comment + '&description=' + description + '&mywork=' + author + '&private=' + keepprivate);
//GM_log("Data string: " + datastring);
GM_xmlhttpRequest({
method: 'POST',
url: "http://www.connotea.org/data/add",
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
'Content-type': 'application/x-www-form-urlencoded',
},
data: datastring,
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==201){
message("Added to Connotea!");
//GM_log("Adding new note: response ok");
response_text=responseDetails.responseText;
//GM_log("Response text is " + response_text);
//GM_log("Location text is " + responseDetails.Location);
//insert_citations_cb( eval('(' + response_text + ')'), doi, textarea );
}
else {
message("Didn't work! (" + response_status+")");
//GM_log("Response not ok!: "+ response_status);
}
}
});
ev.stopPropagation();
ev.preventDefault();
//GM_log("Finishing addnewnote");
}
function cancelsubmit(ev) {
var popup = document.getElementById("stackitpopup");
if (popup) popup.parentNode.removeChild(popup);
ev.stopPropagation();
ev.preventDefault();
}
function cancelusername(ev) {
var popup = document.getElementById("stackitusername");
if (popup) popup.parentNode.removeChild(popup);
ev.stopPropagation();
ev.preventDefault();
}
function changeusername(ev) {
var box = document.getElementById("stackitusernamebox");
if (box.value) {
GM_setValue("username", box.value);
message("Connotea username set to '" + box.value + "'");
}
popup = document.getElementById("stackitusername");
if (popup) popup.parentNode.removeChild(popup);
ev.stopPropagation();
ev.preventDefault();
}
function lookupDOI(ev) {
if (queue_index==0) {
oldqueue = queue;
queue = [];
}
GM_log("queue_index = " + queue_index + " queue length is " + oldqueue.length);
if (oldqueue.length > 0) { // Otherwise it's finished
var doi = oldqueue[queue_index][0];
var numstackselem = oldqueue[queue_index][1];
var numattempts = oldqueue[queue_index][2];
getnumstacks(doi, numstackselem, numattempts);
queue_index += 1;
if (queue_index==oldqueue.length)
queue_index = 0;
window.setTimeout(lookupDOI, 2000);
}
}
function gotoconnotea(ev) {
doi = ev.target.id;
window.open("http://www.connotea.org/uri/http://dx.doi.org/" + doi);
ev.stopPropagation();
ev.preventDefault();
}
function getnumstacks(doi, numstackselem, numattempts) {
GM_log("Attempting " + doi + ": " + numattempts);
GM_xmlhttpRequest({
method: 'GET',
url: "http://www.connotea.org/data/uri/http://dx.doi.org/"+doi,
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
"If-Modified-Since": "Sat, 1 Jan 2005 00:00:00 GMT",
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==200){
//GM_log("Looking up DOI on Connotea: response ok");
response_text=responseDetails.responseText;
GM_log("Response text is " + response_text);
xmlresponse = (new DOMParser()).parseFromString(response_text, "text/xml");
numstacks = xmlresponse.getElementsByTagName("Post").length;
numstackselem.innerHTML = " " + numstacks + " ";
if (numstacks > 0) {
numstackselem.setAttribute("id", doi);
// GM_log("Setting name to " + doi);
numstackselem.addEventListener("click", gotoconnotea, true);
}
}
else {
// GM_log("Looking up DOI on Connotea: Response not ok! - " + response_status + " " + responseDetails.responseText);
if (numattempts < 10) {
queue.push( [doi, numstackselem, numattempts + 1] );
// GM_log("Pushing " + doi+ " back onto the queue");
}
}
}
});
//GM_log("Finished getnumstacks");
}
function getmytags(username) {
//GM_log("Starting getmytags:" + username);
GM_xmlhttpRequest({
method: 'GET',
url: "http://www.connotea.org/data/tags/user/" + username,
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
"If-Modified-Since": "Sat, 1 Jan 2005 00:00:00 GMT",
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==200){
//GM_log("Looking up DOI on Connotea: response ok");
response_text=responseDetails.responseText;
//GM_log("Response text is " + response_text);
xmlresponse = (new DOMParser()).parseFromString(response_text, "text/xml");
tags = xmlresponse.getElementsByTagName("Tag");
tagvalues = new Array(tags.length);
for (i=0; i<tags.length; i++) {
tagvalues[i] = tags[i].getElementsByTagName("value")[0].textContent;
}
//GM_log("Tag value " + arraytostring(tagvalues));
GM_setValue("tags", arraytostring(tagvalues));
//insertemptystack(mytags, doi, textarea)
//insert_citations_cb( eval('(' + response_text + ')'), doi, textarea );
}
else {
//GM_log("Looking up tags on Connotea...failed! - " + response_status);
}
}
});
//GM_log("Finished getmytags");
}
function escapeURL(text) {
var ans = escape(text).replace(/\//g, "%2F"); // Also may need to do with +
return ans;
}
function arraytostring(arr) {
ans = '[ ';
for (i=0; i<arr.length; i++) {
if (i>0) ans += ',';
ans += '"' + arr[i] + '"';
}
return ans + ' ]';
}
function myescape(text) {
var ans = text.replace(/'/g, "\\'");
// May have to also replace ( and ) with \( and \)
// May have to also replace " with &whatever;
// (see the overLIB FAQ)
return ans;
}
function testnoop() {
GM_xmlhttpRequest({
method: 'GET',
url: "http://www.connotea.org/data/noop",
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
if (response_status==200)
bigmain();
else
GM_log("Noop failed!");
}
});
}
function main() {
testnoop();
}
function bigmain() {
GM_log("Starting main!");
empty = "NONE SET!";
username = GM_getValue("username", empty);
if (username==empty) {
enterusername("");
}
else {
getmytags(username);
var allTextareas, thisTextarea;
allTextareas = document.getElementsByTagName('*');
//For every node in the document
for (var i = 0; i < allTextareas.length; i++) {
thisTextarea = allTextareas[i];
if (!thisTextarea.firstChild){continue;}
//For every child of this node check for the presence of a DOI
for (var k =0;k< thisTextarea.childNodes.length;k++ )
{
var reg = /(10\.[0-9]+\/[a-z0-9\.\-\+\/]+)/i;
var ar = reg.exec(thisTextarea.childNodes[k].nodeValue);
var doi_found=RegExp.$1;
if (ar && doi_found){
//getnumstacks(doi_found, thisTextarea);
numstacks = insertaddtoconnotea(doi_found, thisTextarea);
queue.push( [doi_found, numstacks, 0] );
}
}
}
lookupDOI();
}
}
