Quotes from Chemical Blogspace and PostGenomic
By baoilleach
—
Last update Aug 28, 2007
—
Installed
265 times.
// Copyright (C) 2007 Noel O'Boyle
//
// Released under the GPL license
// http://www.gnu.org/copyleft/gpl.html
// --------------------------------------------------------------------
//
// ==UserScript==
// @name Quotes from Chemical Blogspace and PostGenomic
// @namespace http://blueobelisk.org
// @description Adds Chemical Blogspace and PostGenomic content to Table of Contents pages
// @include http://pubs*.acs.org/*
// @include http://www.rsc.org/*
// @include http://www*.interscience.wiley.com/*
// @include http://www.nature.com/*
// @include http://*.oxfordjournals.org/*
// @include http://*.plosjournals.org/*
// @include http://www.pnas.org/*
// @include http://www.biomedcentral.com/*
// @include http://www.citeulike.org/*
// ==/UserScript==
//
// CHANGELOG
//
// 28-Aug-07: Moved overlib.js to blueobelisk.sf.net
// Moved Cb logo to cb.openmolecules.net
// 27-Jun-07: Changed the namespace to http://blueobelisk.org
// Added BMC and CUL, as suggested by Egon
// Added brackets to DOI regexp, as suggested by Egon
// Updated for move of CB to http://cb.openmolecules.net
//
function updateMenu(sitestoinclude) {
if (sitestoinclude & 1)
GM_registerMenuCommand("CBWQ: Don't include Chemical Blogspace",
function(e) {GM_setValue("chemical_blogspace_include_postgenomic",
sitestoinclude ^ 1);});
else
GM_registerMenuCommand("CBWQ: Include Chemical Blogspace",
function(e) {GM_setValue("chemical_blogspace_include_postgenomic",
sitestoinclude ^ 1);});
if (sitestoinclude & 2)
GM_registerMenuCommand("CBWQ: Don't include Postgenomic",
function(e) {GM_setValue("chemical_blogspace_include_postgenomic",
sitestoinclude ^ 2);});
else
GM_registerMenuCommand("CBWQ: Include Postgenomic",
function(e) {GM_setValue("chemical_blogspace_include_postgenomic",
sitestoinclude ^ 2);});
}
// sitestoinclude = CB (bit 1), PG (bit 2)
var sitestoinclude = GM_getValue("chemical_blogspace_include_postgenomic", 99);
if (sitestoinclude==99) {
GM_setValue("chemical_blogspace_include_postgenomic", 1 | 2);
sitestoinclude = GM_getValue("chemical_blogspace_include_postgenomic", 1 | 2);
}
updateMenu(sitestoinclude);
// Load overlib
var p = unsafeWindow;
function waitForOverlib() {
if (typeof p.olMain=='undefined')
// set to check every 100 milliseconds if the libary has loaded
window.setTimeout(waitForOverlib, 100);
else
main();
}
function loadOverlib() {
// dynamically creates a script tag
var overlib = document.createElement('script');
overlib.type = 'text/javascript';
overlib.src = 'http://blueobelisk.sf.net/overlib/overlib.js';
document.getElementsByTagName('head')[0].appendChild(overlib);
waitForOverlib();
}
window.addEventListener('load', loadOverlib(), false);
// Finished loading overlib
function main() {
var d = new Date();
var curr_date = d.getDate();
var DOI_list="";
var cb_stored_date= GM_getValue("chemical_blogspace_data_date", 0);
var pg_stored_date= GM_getValue("postgenomic_data_date", 0);
var sitestoinclude = GM_getValue("chemical_blogspace_include_postgenomic", 1 | 2);
// Check for new DOIs only once per day
if (cb_stored_date != curr_date && sitestoinclude & 1)
{
get_DOI_list("http://cb.openmolecules.net/api.php?type=paper&ids_only=1", "chemical_blogspace_ID_list");
GM_setValue("chemical_blogspace_data_date", curr_date);
}
if (pg_stored_date != curr_date && sitestoinclude & 2)
{
get_DOI_list("http://www.postgenomic.com/api.php?type=paper&ids_only=1", "postgenomic_ID_list");
GM_setValue("postgenomic_data_date", curr_date);
}
if (sitestoinclude & 1)
var cb_id_list = eval('(' + GM_getValue("chemical_blogspace_ID_list","{doi_id:{}}") + ')'); // check this line
if (sitestoinclude & 2)
var pg_id_list = eval('(' + GM_getValue("postgenomic_ID_list","{doi_id:{}}") + ')'); // check this line
var allTextareas, thisTextarea;
allTextareas = document.getElementsByTagName('*');
//For every node in the document
for (var i = 0; i < allTextareas.length; i++) {
thisTextarea = allTextareas[i];
if (!thisTextarea.firstChild){continue;}
//For every child of this node check for the presence of a DOI
for (var k =0;k< thisTextarea.childNodes.length;k++ )
{
var reg = /(10\.[0-9]+\/[a-z0-9\.\-\+\/\(\)]+)/i;
var ar = reg.exec(thisTextarea.childNodes[k].nodeValue);
var doi_found=RegExp.$1;
if (ar && doi_found){
//GM_log(thisTextarea.childNodes[k].nodeValue+" :"+doi_found);
//when a DOI is found, check if it is listed in chemical blogspace
if (sitestoinclude & 1 && cb_id_list.doi_id[doi_found])
get_citations_cb(doi_found, thisTextarea);
if (sitestoinclude & 2 && pg_id_list.doi_id[doi_found])
get_citations_pg(doi_found, thisTextarea);
}
}
}
}
function get_DOI_list(myurl, variablename){
GM_log("GETTING DOI LIST");
GM_xmlhttpRequest({
method: 'GET',
url: myurl,
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==200){
GM_log("Get Doi List: response ok");
response_text=responseDetails.responseText;
//GM_setValue("chemical_blogspace_ID_list", response_text);
GM_setValue(variablename, response_text);
}
else GM_log("Response not ok!");
},
});
}
function get_citations_cb(doi, textarea) {
GM_log("Starting get_citations");
doi_list = eval('(' + GM_getValue("chemical_blogspace_ID_list",0) + ')').doi_id;
GM_xmlhttpRequest({
method: 'GET',
url: "http://cb.openmolecules.net/api.php?type=post&citing_paper="+doi_list[doi]+"&format=json",
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==200){
GM_log("Get Doi List: response ok");
response_text=responseDetails.responseText;
GM_log("Response text is " + response_text);
insert_citations_cb( eval('(' + response_text + ')'), doi, textarea );
}
else GM_log("Response not ok!");
}
});
GM_log("Finished get citations");
}
function get_citations_pg(doi, textarea) {
GM_log("Starting get_citations");
doi_list = eval('(' + GM_getValue("postgenomic_ID_list",0) + ')').doi_id;
GM_xmlhttpRequest({
method: 'GET',
url: "http://www.postgenomic.com/api.php?type=post&citing_paper="+doi_list[doi]+"&format=json",
headers: {
'User-agent': 'Mozilla/4.0 (compatible) Greasemonkey',
'Accept': 'application/xml,text/html',
},
onload: function(responseDetails) {
var response_status=responseDetails.status;
var response_text=null;
if (response_status==200){
GM_log("Get Doi List: response ok");
response_text=responseDetails.responseText;
//GM_log("Response text is " + response_text);
insert_citations_pg( eval('(' + response_text + ')'), doi, textarea );
}
else GM_log("Response not ok!");
}
});
GM_log("Finished get citations");
}
function insert_citations_cb(obj, doi, textarea) {
var bubbletext = "";
for (var i=0; i<obj.length; i++) {
post = obj[i];
bubbletext += "<br/><a href='" + post.url + "'><b>" + post.title + "</b></a> <i>" + post.blog_name + "</i> " + post.summary + "... ";
}
newanchor = document.createElement("a");
newanchor.setAttribute("href","http://cb.openmolecules.net/paper.php?doi="+doi);
newanchor.setAttribute("onmouseover", "return overlib('" + myescape(bubbletext) + "', STICKY, MOUSEOFF, WIDTH, 400, VAUTO, CAPTION, 'Powered by Chemical Blogspace');")
newanchor.setAttribute("onmouseout", "return nd();")
img = document.createElement("img");
img.setAttribute("alt","Comments at Chemical Blogspace");
img.setAttribute("src","http://cb.openmolecules.net/images/cb_logo.gif");
img.setAttribute("border","0");
newanchor.appendChild(img);
//insert the created node before the next sibling of the DOI containing node
textarea.parentNode.insertBefore(newanchor, textarea.nextSibling);
}
function insert_citations_pg(obj, doi, textarea) {
var bubbletext = "";
for (var i=0; i<obj.length; i++) {
post = obj[i];
bubbletext += "<br/><a href='" + post.url + "'><b>" + post.title + "</b></a> <i>" + post.blog_name + "</i> " + post.summary + "... ";
}
newanchor = document.createElement("a");
newanchor.setAttribute("href","http://www.postgenomic.com/paper.php?doi="+doi);
newanchor.setAttribute("onmouseover", "return overlib('" + myescape(bubbletext) + "', STICKY, MOUSEOFF, WIDTH, 400, VAUTO, CAPTION, 'Powered by Postgenomic.com');")
newanchor.setAttribute("onmouseout", "return nd();")
img = document.createElement("img");
img.setAttribute("alt","Comments at Postgenomic.com");
img.setAttribute("src","http://www.postgenomic.com/templates/clean/logo.jpg");
img.setAttribute("border","0");
newanchor.appendChild(img);
//insert the created node before the next sibling of the DOI containing node
textarea.parentNode.insertBefore(newanchor, textarea.nextSibling);
}
function hashtableToString(hashtable) { // Useful for debugging purposes
var result = "";
for (var i in hashtable) {
if (hashtable[i] != null)
result += "{" + i + "},{" + hashtable[i] + "}\n";
}
return result;
}
function myescape(text) {
var ans = text.replace(/'/g, "\\'");
// May have to also replace ( and ) with \( and \)
// May have to also replace " with &whatever;
// (see the overLIB FAQ)
return ans;
}
